Plugin can also visualize the convex hull vertices by generating a new To necessary calculations, this plugin can also measure the surfaceĪrea, voxels, and volume for the point cloud andĪrea and Volume use the image calibration and report values in units^2 Into a point cloud for subsequent construction of the convex hull. Pixels within the threshold values will be UsersĬan define thresholds prior to executing or the plugin will assume aĭark background and auto threshold the stack using the IsoData methodĪnd the stack histogram. Solidit圓D, Convexit圓D, and Form Factor3D based upon a convexĪn 8-bit or 16-bit grayscale image stack. Plugin calculates the 3D shape descriptors Microglial ramification and redistribution concomitant with the attenuation of choroidal neovascularization by neuroprotectin D1.Ĭenter of Excellence, Louisiana State University Health Sciences Submission and will update the citation at a later date. This plugin aids your investigations, please cite theįollowing abstract. Save 3D_Shape.jar to the plugins folder and restart ImageJ (or Fiji). Results are slightly smaller than 3D Object Counter which appears to use 8-connectedness. Surface voxels are determined using 4-connectedness. V1.1 - Reseults gave the cube of Fom Factor 3D, fixed in v2.0Ĭalculates surface area from pure voxel face. V1.1 - Skipped all points in first slice, still works correctly Incorrect Convexit圓D calculation, fixed in v1.1 V2.0 - : Changed plugin name from 3D Convex Hull to V1.1 - : Added Form Factor3D measurement, fixed bug
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